Abstract: Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly improves the ...

An interactive Python toolkit for DNA, RNA, and protein sequence analysis — including alignments, nucleotide counting, transcription, complements, and reverse sequences.

† Department of Chemical and Biological Engineering, University of Wisconsin−Madison, Wisconsin 53706, United States ‡ Department of Electrical and Computer Engineering, University of ...

Bioinformatics education can be defined as the teaching and learning of how to use software tools, along with mathematical and statistical analysis, to solve biological problems. Although many ...

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Abstract: One of the most fundamental operation in biological sequence analysis is multiple sequence alignment (MSA). Optimally aligning multiple sequences is an intractable problem; however, it is a ...

Alignment of DNA and protein sequences is a basic tool in the study of evolutionary, structural and functional relationship among macromolecules. Present sequence alignment methods are somewhat ...

A phylogeny is the evolutionary history of a group of organisms. To date, sequence data is still the most used data type for phylogenetic reconstruction. Before any sequences can be used for phylogeny ...